Scaffold Ga0208693_1011097

Overview

Basic Information

• Taxon OID: 3300025618
• Scaffold ID: Ga0208693_1011097
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC071_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4412
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 37.8
  • Long. (^o): -122.27

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064748	Metagenome / Metatranscriptome	128	Y
F078879	Metagenome / Metatranscriptome	116	N
F091649	Metagenome / Metatranscriptome	107	N
F103501	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208693_10110971	F078879	N/A	MTPDVSDEVKEGYELLEGIGIVERTESGQYCPTEVGAAIIYAVLCKQMLGADADDFKSEESQQVMMNRLEEMDLVEQVDESFIITTEGFATFFTNLTYDCPCREEFLDWLALATAELAEEMEQP
Ga0208693_10110972	F103501	AGGA	MVKNIILEGVVSFDAKYDLWCVGEDYIEDIISDFEDKKVLVTITEI
Ga0208693_10110973	F064748	AGG	MKKYRFIGNMEDVTPCGNMDEECIAVGCKGKVWGQCHFDPKLNLLSSGSECYEEVRDTVFRVEKDNLFSSGGLNPHFDNKGKIWMKASHLKKHFEQSIGYNHEIKQSIPLYKEYPYDAEVVEYALVEVKRTPVRKFVEGGE
Ga0208693_10110978	F091649	AGAAGG	MPTYDDPDYEWKQMVKKNGICDPYEKSIREFKEEFERIEKKLKQTDG