Scaffold Ga0208693_1009640

Overview

Basic Information

• Taxon OID: 3300025618
• Scaffold ID: Ga0208693_1009640
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC071_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4871
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 37.8
  • Long. (^o): -122.27

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054970	Metagenome / Metatranscriptome	139	Y
F079824	Metagenome / Metatranscriptome	115	N
F101423	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208693_10096401	F054970	N/A	MTKNTPEALQKIVDKLVVDLFKNDDCDNWECEECPLYLKEVEEDPYYGKHTCGWLLLRSATRKIMRK
Ga0208693_10096406	F079824	AGGAGG	MIYGFFGSIPGCPHNRGNHALRGNGKTLCLTFVGYLDYLSGRDVISNYKTSFSEFVSTEKIAEMVVNEDIRDTTILLSELQLYMNSLGVNTKELRTFVGSVIGQSRKRNTDIHYDTQRYTDVHPRIRVQTDRAFLPRKFHADGKPCQLDRCDSTHFIYLYQHDPYMDRPVVKLRADKFGELYDTNEIVALIKD
Ga0208693_10096408	F101423	N/A	NPALKAFMYRLLNKPYLDIRIFRGYKEITRIVTQDTGMRMFSVEGVGTFIVPTGDNLLKQYFNKYCVYLNYNIQNSNPGIPVECEKWTQYEYPPLSPKEFQVLLEAQTVADLLSETEKDTKWIWYLLIGGIVLVALIMLMGGS