Scaffold Ga0209138_1019409

Overview

Basic Information

• Taxon OID: 3300025617
• Scaffold ID: Ga0209138_1019409
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3134
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027808	Metagenome / Metatranscriptome	193	Y
F043147	Metagenome / Metatranscriptome	157	Y
F072121	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209138_101940912	F072121	AGGAG	MLLPNVSTAIIMLELRNRVLDQIDDPEPQYDACLSNLSGKRLLELGAVLQDTPITTPAPKEVR
Ga0209138_10194095	F027808	GAGG	MTDHENQYDPQLEWVIDEVIFAITQQKQTNTVWFDVYETITGSTADEAWDEYQATLRAEAEGEALFEKEQDQ
Ga0209138_10194097	F043147	AGG	MNKVPHVERDELSGGLTMSCASLWCQFLAEEFDWQGNRSLSEYYKRRAQELSVAPTGSLHDRQLEKAIKQWKR