Scaffold Ga0209138_1016537

Overview

Basic Information

• Taxon OID: 3300025617
• Scaffold ID: Ga0209138_1016537
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3543
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005010	Metagenome	415	Y
F056899	Metagenome / Metatranscriptome	137	N
F063073	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209138_10165371	F056899	N/A	MSKNTFVRASISGDYGQDLVMKYLKDKGYEVEEAPKKLFYDWDVKGKKGNRTVTIEVKYDSKAYMWAARRGTPEQPNLYIEFRSTTRNADSGILKSTADFYFYILKTGDKDIAFVFDRVQLLQHLQMSNYKIVGNSATGDDNAQGWIPPLHELLVARYGYKATINLTEYA
Ga0209138_10165373	F063073	N/A	MNLTAEEKSSTPIHSLILDRRKAFAELIRAFLRFNVPSAKKVEVMPNGSLLINDTIFKVDISDYTGIEVGLGYIFLNPSSGRLVIEKDNLKKVYKVEVDLLDESVY
Ga0209138_10165377	F005010	N/A	MMRKRKHIREIQKYLEMLMIDQVNITLHASRFGWSEDIQKQLTNSALLIRKYQRRLRLIK