Scaffold Ga0209138

Basic Information
Taxon OID	3300025617 Open in IMG/M
Scaffold ID	Ga0209138_1003998 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025617 Open in IMG/M

Scaffold ID

Ga0209138_1003998 Open in IMG/M

Source Dataset Name

Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10152
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (100.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

10152

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

28 (100.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Saanich Inlet, British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Saanich Inlet, British Columbia, Canada

Coordinates

Lat. (^o)

48.6

Long. (^o)

-123.5

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002502	Metagenome / Metatranscriptome	553	Y
F021020	Metagenome / Metatranscriptome	221	Y
F029774	Metagenome / Metatranscriptome	187	Y
F034945	Metagenome / Metatranscriptome	173	Y
F099390	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209138_10039981	F021020	AGGAG	MSNNISLNNSIICENYDLNIWDKVGYETEYQEEGWAIECYTYPYVGAFYGSGEHHSTILLTPTESKRLTLGWGTDLGGDYTPDADFWLDKDSFFETYTDIPERVANLLWALPGYEQRLDISA
Ga0209138_100399814	F029774	GAG	MARSISVKVPTSLLISQIEERIAQIDAEIAEYPAKREAFEKAEEEYKSQLANFVAAYIGENLDRIGYEYSDTIRINTGYVGFRGNGGKVELTFDTDAIVGFPVRPEAPEKPNQRESFGRDYATRKELLEKNLRILKMTSQEEVNASTYGAIMEII
Ga0209138_100399815	F002502	AGGA	MENITVGSQFTTQKSGVSGTVQEIVKNANGTSRIRLSLANGDSRWTTVK
Ga0209138_100399816	F099390	AGGAG	MKDGTYVVRMIEGLPVFGNQINMSDGYWVSDDSGVSVHGELDYDGVVDALSLMDIEDGEIVGIWQNKGLSYIDRAYHFRNRSTALKAGEAFEQIAIWDCATGTDIRI
Ga0209138_10039982	F034945	AGGAG	MGDRVNVGIRGTDGNTIFLYLHWGGEDANEIVARAIAHSMSRGDDEAYLTRIFVSRVIDRDWDKETGVGMSINKLSAMGDGYPVPVYNYANKTISLHEEKWDKAGGYIDLEPQTVYNVDEYLAKFAIRGVGAYV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209138_1003998

Overview

Ecosystem & Geography

Associated Families

Sequences