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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025617 Open in IMG/M |
| Scaffold ID | Ga0209138_1002713 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNA (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13296 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (90.91%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Microbacterium phage Shocker | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Saanich Inlet, British Columbia, Canada | |||||||
| Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F043342 | Metagenome / Metatranscriptome | 156 | Y |
| F043418 | Metagenome / Metatranscriptome | 156 | Y |
| F046310 | Metagenome / Metatranscriptome | 151 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209138_10027132 | F043418 | AGGA | MGLLDDYGIDTSEAETPSYDMEDGIYEFTVGDVYVKQGSQKFPDRAWVIVEYLVGEEGKKQSELFELPADPENLTDRERQKLGYYVARLMDLGVDRSAVNDVDREDLIGLRGTLQLYSSAGKGANAGKMFQNVKNVKIEKASEAPQPAQKKTRQTAASNPFA |
| Ga0209138_10027133 | F043342 | AGGA | MDATTELREFYNYIWGDDAVRETPTFVYLPVEHEGKWTPYMFEWPRQREGVIRHTLKWSAIKANVFYSPALFKAANPAKDNVLGSWMLWVDFDGNAPAEWDQEAEEGKMFIPPPTLIVQSSIEGHEHCYWKLDKFVDDIETLEDRNRALAYVMHADTSGWDADQILRPIRTTNHKRNMPVIVKEWEREDAV |
| Ga0209138_10027137 | F046310 | GAG | VVISVDPGETTGIAFWEDDGTFISRTVHTLDDILDFTASGNENITTIVCEDYRLRQGKQMVQTGSRFVAVQIIGALKSMAKRVGAKFVLQPANVLTVAALHSGVKRPANHSKSHDVDAYNHGYYYFETKGLLQPKPL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |