Scaffold Ga0209138_1001876

Overview

Basic Information

• Taxon OID: 3300025617
• Scaffold ID: Ga0209138_1001876
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17058
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (40.54%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001222	Metagenome / Metatranscriptome	743	Y
F003188	Metagenome / Metatranscriptome	502	Y
F036588	Metagenome / Metatranscriptome	169	Y
F083269	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209138_100187611	F003188	GGA	MKEPKKILRHVLHSLYPLGYRIKEKNPSDELMNKKLFINVLTQLKAIEDRRDFMESEIGMDMTQYEDQFFNVIEDLMKMHFSKEQLALIQLYLYQLVPEDDWDGTITIEVGKKQEQVSFKKPEDVWNAINKFGK
Ga0209138_100187622	F036588	N/A	MWNRFTYFFRRKYRQIQRVIDFLPMIWNGFDFDYKYSIELFKKQLERQAKHLESERAHTLSAPINAQKIRTAIRLMDKVYDDEYGLEYMDTIEKLYGKTHYDFVELTEKSKRTGEFLYKLKLRNELAVDEQHQKEIDEVRNQMIIRSQERQKRAHKLLWDYIEHNIRWWWD
Ga0209138_100187624	F083269	N/A	MIKLASVTKTSTIKADGEEIERKRVVELSHDWSERDITLFKKIVKQGGTVRIKGVKYEITPGEKITTSKGWADGGAPPIPGPEN
Ga0209138_10018769	F001222	AGG	MDTLEKLVRQTLTEAAKINFAGHKFVLKVDTNEDPNKKGVKVQFLPTQFGSISQTEQNDIANELAVRLNDGLAEYDLRVERDRELKDKTIIGFFIYADQFDKIIRRALSKQNPESSQVGD