Scaffold Ga0208149_1013475

Overview

Basic Information

• Taxon OID: 3300025610
• Scaffold ID: Ga0208149_1013475
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2434
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002733	Metagenome / Metatranscriptome	534	Y
F006094	Metagenome / Metatranscriptome	382	Y
F011124	Metagenome / Metatranscriptome	295	Y
F016757	Metagenome / Metatranscriptome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208149_10134755	F016757	AGGAG	MPKYEVKVEATTQRDIIVDAVSEYEAWILAQIEMRGLVGGENTQVLTSREIDDAVA
Ga0208149_10134756	F006094	GGAG	MLLHEFYSDDDCSRGDISYRKSCVFKEPDGSYTIVLIQDGAIVEELNLLGRSEQYAEDTAEDWVIGVRR
Ga0208149_10134758	F011124	AGGAG	MIKFDPDKTYGATVWDLSIAVVDFEADDYVRNDDGSIKLFTLPNHDYSYICDDIDVHNLQERDEGDDYNG
Ga0208149_10134759	F002733	AGGAG	MAKSNTVWLQLTPTEANALMMLLDGEMESRFRYEGLDLKEWETLDLEANKIWAYHKYKTWYMENCSE