Scaffold Ga0208149_1002114

Overview

Basic Information

• Taxon OID: 3300025610
• Scaffold ID: Ga0208149_1002114
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7093
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (22.22%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002528	Metagenome / Metatranscriptome	551	Y
F006685	Metagenome	367	N
F017635	Metagenome / Metatranscriptome	239	Y
F068778	Metagenome	124	N
F073484	Metagenome	120	Y
F099219	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208149_10021141	F006685	N/A	MSKDKEQTRGPTWRMREWGRTAYRNRQAKLRMDGESSQTESAKRLLRVMAPRLGKRVDDFMYTFGGNTEHTTPLFLTFVLDMCPYQIASMALQTVLDNLQFNLPVGRMAYKIGKAFENKARWDKAMELMHPHKKDLLALDDRSKAMKLKQFYDYEEERFTLWDTKCKAGLGAWLLEEIRVETGVWEIGFAVGTQKGHKPERICVPSGEYTDWVKRFDAWKETTRVFKMALPDEPVDWYELIGGGYSLKHMPPQEFFTGKPMSWFKDYESSYTHAFSAVNKLQKVSWKINKEILDITLKCYDNKRVVGNIPNFSEIPEQPRYTGDDEHELRAWKLKQKDIKSVNEANSSKRYLTIRILHLAKI
Ga0208149_100211410	F073484	N/A	MKINQPNENCLYVTIGNFTYYFDDSIDGECTVNRWHKDDDDINEPELFQTTENE
Ga0208149_100211416	F002528	N/A	MKKKTPKKTITTSPSSSSDPTLPTIRIVSEEEEMHVKLELEMEDSTHKMLVKWGKEVASDEDYINIAISAGLKHYIHRTDATH
Ga0208149_10021144	F099219	N/A	MKRDVIPTGLFTRTIHGYDEWLNRYNPYDDEYDEELEEHLEKMREMDNIDDQKDYCDDHHLKYGDIEAWL
Ga0208149_10021145	F017635	N/A	MQSSNNEPTFLDMNDLCDDSLEALIQHYLSVQQKLPNNLAVRERLLELEREQFNREREASTIEGVIRQNTENPL
Ga0208149_10021149	F068778	N/A	MNYLLGNKNIVDWGVFAEVEDSTDPELTQQIELVLPEHIQQEIYKLITDNIDQTKAVEALAQF