Scaffold Ga0208149_1001113

Overview

Basic Information

• Taxon OID: 3300025610
• Scaffold ID: Ga0208149_1001113
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10089
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (52.94%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000464	Metagenome / Metatranscriptome	1105	Y
F010001	Metagenome / Metatranscriptome	310	Y
F016994	Metagenome / Metatranscriptome	243	N
F019843	Metagenome / Metatranscriptome	227	Y
F020386	Metagenome / Metatranscriptome	224	Y
F022908	Metagenome / Metatranscriptome	212	Y
F025320	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208149_10011131	F019843	N/A	MTGKNKSELVKQIEAYGLKSKLADLAHREQARRPFR
Ga0208149_100111315	F000464	N/A	MKLSQQQKIRLYSHHEHDLDIEDEFWPIMGILLAIVGVWTGIIHFIDWLTIDSIPWWAEPFTIVPIIFLLIMKEHYDSLNPLHWWPMVWGYEAKLPEEDRITIRPLDTERIMDEHGGRLNVYIIDYEHIKFRRRKDAVIFGLKYF
Ga0208149_100111316	F010001	AGAAG	MQDKASKDEVRLLRAQIGNLEVQVADYQQIVKELSDKLNVYENKYGTVFVSSRNTSTQK
Ga0208149_10011136	F022908	GAG	MPTHLQEAIKIILSADSKLRDKTPRIYAMPKDEHMPKAFTNLKRMRYLSHDVCAGRNIKRWLWRDYHPEIILQQPPFDQYEDQSEIFTLIRHPEERWWSGIKDMFYFMPWYGWWANDKIMEQWPHFGRGTLRYHDIMQDIKPQHLIKCDAGLNDRMINFAKTHGLLCYGNIPHEKALRHSKPEIKSLEDKGVRELKAWLRENPDRQKQLDEYLAPDWQYWEKVEYQD
Ga0208149_10011137	F025320	AGGAG	MTTKVNPTKANTTDHLSGKTITAVTVDFAVNGTNFASTEMGPLGAVQLAIANLSQIGTPLIITKLRSDGANDGQVFDIIWEGEFGTDTYDGTNSETLAAYLQTELRLLTSVGAGPVNLNSATVVAATAASF
Ga0208149_10011138	F020386	AGGAG	MPISRNNFTSLPVAAEQEGVDVSYFTVDFIADVSAEVGDPQADSTVAGLALVQAAIMNLGINILATGPLGNSDTELTYMVRTDSLDVANHITANGIRDAIRAVDTAGRAASATPRNTANFSSATVTAKTLAIAV
Ga0208149_10011139	F016994	AGGAGG	MATENNTTFVAGTQSFLGKELEFITIDAGEELANHLLKNETANAIENTVRQYGNIVGSGPLFDTNASRTYIVEGTDMFVGSPASSGGSFTLTESGADGSSVGTLLAALKALGTVDSIDLNDSGTTAKIENLEI