Scaffold Ga0208149_1000245

Overview

Basic Information

• Taxon OID: 3300025610
• Scaffold ID: Ga0208149_1000245
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21104
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000464	Metagenome / Metatranscriptome	1105	Y
F002602	Metagenome / Metatranscriptome	544	Y
F031897	Metagenome / Metatranscriptome	181	Y
F055858	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208149_100024510	F055858	N/A	MPNSDNTYGTYNKQTKIIAQNDDGSTALTTFADVDAAKAHFFTAEALTVMDECCTVLEWALVGNTGLKTTFAFGTKGTGTAEADDWAAQYNTRKTALIDADGWVKSQTPQFTFTDSSDHL
Ga0208149_10002452	F000464	N/A	MYSHHDHDMDFEDEFWPIMGILLAILGVWTGIIHLIDYLTINAIPWWLEPFTITPVIFLLIMKEHYDSLNPLHWWPMFWGYEAKLPDEDRITIRPLDTERIMEQHGGRLNVYIVDYEHIKFRRRKDAVMFGLRYF
Ga0208149_100024533	F031897	AGG	MATIKEKKKLIRTIKNPIRYFRLNFSRYGGEVAMGTITKDQYEYWTDNDGFEEYMAAVDFDADDANKEIPKRAQFDHPFYEYSN
Ga0208149_10002454	F002602	AGG	MKNTDQIKALVVAIDEKDNVIRKLSAELGSLEVQIADYSQIVQELSDKLKMYENKYGTVFKPSRK