Scaffold Ga0209654_1004123

Overview

Basic Information

• Taxon OID: 3300025608
• Scaffold ID: Ga0209654_1004123
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8474
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027808	Metagenome / Metatranscriptome	193	Y
F043147	Metagenome / Metatranscriptome	157	Y
F072121	Metagenome / Metatranscriptome	121	Y
F089559	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209654_100412312	F072121	AGGAG	MLLPNVATSILIMELRNRVFDQIEDPEPQYDVLLSNLSGKRILELGAVLQDVPITNTEPKEVR
Ga0209654_100412314	F043147	GAGG	MNKVPPVERDSSTGGLTMACAGLWCQFLSEEFDWQGNRSLSEYYKRRSQELSRAPTGSLHDRRLEEAIKAWKR
Ga0209654_100412315	F027808	AGGAG	MTDHENQYDPQLQWVIDEVIHAVTNKQCTDLVWYELYEQLYQTTPDDAWDEYQQQQLFEAKGEALYEQSTTSRA
Ga0209654_10041238	F089559	AGGAG	MARHIYTVEDFEERLSEFTIGTESVQEIMDFVRRLDDRYNWQSKRCNTAARLLGHDMINECMMDEDNV