Scaffold Ga0209654_1004097

Overview

Basic Information

• Taxon OID: 3300025608
• Scaffold ID: Ga0209654_1004097
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8515
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020897	Metagenome / Metatranscriptome	221	Y
F032267	Metagenome	180	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209654_10040973	F032267	AGGA	MTFTEQIYDQINALSPLSTDDFSINWLCQSRSYYSSNKARGLEASNSALVKLMNKLLEQRDVLMTKNSHQFLVSLAQKYEVIANRVGKEIADRSIKSNFAHENVRKILHRITAEINEQKYPSSPPIIIC
Ga0209654_10040975	F020897	N/A	MLPSELNNVRSAYRRDMINQRQHKLRSNAESIKTSLKHLDRNQLTDWDLETLRMVDDILMDEKVLKLRREIKSLMKSAGKDYEIEKELWQRRKKRK