Scaffold Ga0209654

Basic Information
Taxon OID	3300025608 Open in IMG/M
Scaffold ID	Ga0209654_1002604 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025608 Open in IMG/M

Scaffold ID

Ga0209654_1002604 Open in IMG/M

Source Dataset Name

Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12149
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (7.69%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

12149

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (7.69%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Saanich Inlet, British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Saanich Inlet, British Columbia, Canada

Coordinates

Lat. (^o)

48.6

Long. (^o)

-123.5

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032285	Metagenome / Metatranscriptome	180	Y
F038191	Metagenome / Metatranscriptome	166	Y
F045129	Metagenome / Metatranscriptome	153	Y
F049660	Metagenome / Metatranscriptome	146	Y
F095485	Metagenome / Metatranscriptome	105	Y
F103295	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209654_100260421	F038191	N/A	MTEKDLIELDFTRNDEEDGDFHYYTYDIGSFCLISTSNDEVENDEWFVEVFETPEIRFTNPTELSALLTLLKNNSNC
Ga0209654_100260426	F032285	N/A	MNWESVHISDKIHWLKDVVMNSTNYKDGDELIINALITGSKNTFSGEMGFDIQPHHMKYMRELWNEHIVTQKDNSIILKLREKS
Ga0209654_10026045	F045129	N/A	MSIEYIDQPYRDKIVEILSTDDSEDKKQSELKLYLLKEEYFKHFYSEPTWLTREIIKDFK
Ga0209654_10026046	F095485	N/A	MKASDLFKELGLGDSDMESAREWVNYKHFSETVPDVLTLNEYVDTVYKKTVTMDAKPHTWFSERYMSEKYLQSNVSIGSEYISDLEKRIVKILQNGKTYELHIEKFLELCLSVVRKSELALPKEALVYLNEIYKGKH
Ga0209654_10026047	F049660	N/A	MQRYSGKPRGLINQGGATHQKDRDKLKQNGKNYNSIDFEMSNKITLANYKERSNPIGDLLVGGKRVELTWSECNKIIATLEDAKTSHQRKIQLGLFG
Ga0209654_10026048	F103295	N/A	MEIDKAKFKRLKKKVLTKYPKASTQRTSDGKYFVSDGVGNELMKEYMIPTQNTVAAAWFWLADVMKVHQNIERTHPKRMDLKSFEAKFARISKRNKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209654_1002604

Overview

Ecosystem & Geography

Associated Families

Sequences