NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209654_1002438

Scaffold Ga0209654_1002438


Overview

Basic Information
Taxon OID3300025608 Open in IMG/M
Scaffold IDGa0209654_1002438 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12813
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (81.82%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034398Metagenome / Metatranscriptome175N
F039049Metagenome / Metatranscriptome164N
F040080Metagenome162Y
F052272Metagenome / Metatranscriptome143Y
F061813Metagenome131N

Sequences

Protein IDFamilyRBSSequence
Ga0209654_100243811F034398GGAGMIAEQYRNIKPHFVHADHMPMVCRWCCILLDQDTENPPFQPARYFVANVFAETKEQVLDCLGEEYPWCDIMYIDKALGGHTDDDFLESWLHHFDANNAQPIREAPHGNNYDK
Ga0209654_100243812F061813GGAGGMATTTISNENKTRVDRLVYKQVTETLALVKQASETLNDTGDVESDSLDNASSHLKCVIDMLDHYLRANA
Ga0209654_100243817F040080GAGGMKTLNEFKHDLGTLRTDLNATTYKVEKVQELLSDLVEKLDGLYDQSVSNKDQAGDLVRAADDLKSRQEDRRLYATHYRMLAILNEYGVMHREHVARLLGVKDQTVTQMLHVCRHHGVADLKTSRGVVSLQSLADGVSDNTNFQI
Ga0209654_100243818F052272GGAMKTETTLNFTAEQLNELKRIVDTVGWATRDEKTGHIDAYVSENRVKFAKDLAGVLGRMEKAALVGTSEGL
Ga0209654_100243820F039049N/AMNLLPQTQKKRQLSDQQQQFLDALFENNGNFSVACEVAGYSKGSIGHLKDSLADEIIERSRSILAGGAIKAANKLVATIDAPEIERGDNIRLQAAESLLNRIGLGKQETFNHNVTAIHGVVLLPPKKEMVIEHGE
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