Scaffold Ga0209654_1002408

Overview

Basic Information

• Taxon OID: 3300025608
• Scaffold ID: Ga0209654_1002408
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12950
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022786	Metagenome / Metatranscriptome	213	Y
F042639	Metagenome	158	Y
F044813	Metagenome	154	Y
F096247	Metagenome	105	Y
F102110	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209654_100240810	F096247	GAG	MSRLTPDVTCNICTCEFDIEAEGGVQGYIGIIPFSLCPMCYSGLMDMYEQLNGDFDEHENGQEIQGNDEE
Ga0209654_100240813	F022786	GGAG	MTIDDDKLIALEQAGLLKGRYYIVLEPVEDEDEDEDGFTIRAYATRDTQVEVDGEKMFDPTYVILQGLLGAVHENFDDLYDMGLERVTLEALGEVVPEEELKPEHRDRIKSMEGNVITARFGELQ
Ga0209654_100240816	F042639	AGG	MKTADIKKVVELQGKILKLKDRIMKDVERHNTMVIDELRPALEEVQYATIYQLGDMTYKRGKVFCQLNCEDLGLGIKADGLATLRRIVVEDKNAPSDDAESGSSTPVSK
Ga0209654_10024084	F044813	AGAAG	MADPKAQLLNFTIELNRDGNIEFNLDCVNTIDMERILRNLGDPVYPHKIGNIVRHYFRSLQDKIKEERT
Ga0209654_10024086	F102110	GGAGG	MTDARVQKMLDRLKLQIEACELNPMLGNKEVLADAHKMIYDLRNKLRFRKPYDRDHPDTRAN