Scaffold Ga0209654_1001145

Overview

Basic Information

• Taxon OID: 3300025608
• Scaffold ID: Ga0209654_1001145
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22014
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (14.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002035	Metagenome / Metatranscriptome	601	Y
F011942	Metagenome / Metatranscriptome	285	Y
F021182	Metagenome / Metatranscriptome	220	Y
F026239	Metagenome / Metatranscriptome	198	Y
F071292	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209654_100114517	F071292	N/A	MEVFLVIAFNKENFYPVGICDNLILAKQYAQREYKERAKSHRIRVFKKMMNAPQMMEDKIVYEL
Ga0209654_100114535	F026239	N/A	MALLKNNKGEYKYQFNWMNENGTTNGFNSVWASNKREAVKLAKKMENPAHWAWYNGKEYITVPAEVTSGGHCFWNDGMYVDVKSMYKATQKQSDSMDMLSWMMSN
Ga0209654_100114538	F021182	N/A	MSKKYPNGYWPKIEYWTGKLKDEVANTKEPDLRMIDKIHQKLDFFIQKQWDLAISVK
Ga0209654_100114539	F002035	N/A	MGEQVANNREMQEVMYLHQKDDKWYILSEPKSPGLVKKEYIPIGNRLVYPKKWGRKKAASVLLDYLIDDNEKIKDSAIERLEVLYKLNNEVEDWK
Ga0209654_100114546	F011942	N/A	MGPEEYHYLEKFNNEYFKNIREVRISSLYWIWDSINSKNPTIRTSVVIELIPYTSLVELLSELEDEERYEDCKVVFDIMKIYKENEKNGEYKELF