Scaffold Ga0209654_1000640

Overview

Basic Information

• Taxon OID: 3300025608
• Scaffold ID: Ga0209654_1000640
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32673
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (88.24%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006699	Metagenome / Metatranscriptome	366	Y
F007506	Metagenome / Metatranscriptome	350	Y
F011808	Metagenome / Metatranscriptome	287	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209654_100064016	F007506	AGG	MIAMRFHHVFGLSIETVQAQPVLGWKLDEDINDAQVYFFDGFVINIPFIKIMIGDVFDVF
Ga0209654_100064018	F011808	GAGG	MKDKTTNLLQRLKLIKDSDPFNKRILNDCFDHFQALQHEIERLQYHNNNLMNVIYQNQSELES
Ga0209654_100064047	F006699	GGAG	VLKRFDFKCTECNHIEEQWVDSNDKLTTCYECGHTAVRIISPISTKFNGVGWPDADDKWARDHERAARK