Scaffold Ga0209654_1000231

Overview

Basic Information

• Taxon OID: 3300025608
• Scaffold ID: Ga0209654_1000231
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58658
• Total Scaffold Genes: 86
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 75 (87.21%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002430	Metagenome / Metatranscriptome	560	Y
F049291	Metagenome / Metatranscriptome	147	Y
F060432	Metagenome / Metatranscriptome	133	Y
F071780	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209654_100023152	F060432	AGGAG	MTYEITHKQRLELLEAHNNLRTALSNVSECQDLWLSDVGNLEKLQYSLHRIFKFVPSQDEDGRSMYWGAWVLSEEDSNDD
Ga0209654_100023153	F002430	AGGAGG	MITINLPPKQVNAILVALDTEIEIQLGFVPDWETFPEIAALLMAYYTTRCKFEENQDDI
Ga0209654_100023156	F071780	AGGAG	MTLVLSDYERGYLTCFYDTVVFDSIAYEDDEDWFGVQIGDRMFDINSRIDEDTGKVIAIVYECNKVHDNWETNRQNYWVLTDEENKDG
Ga0209654_100023162	F049291	GAGG	MRTNIKKMRIKKVSKKAPKWQQQRLKDQSLRVTLMNRSFDLSETEDEAVAIHQGRRYP