Scaffold Ga0209654_1000017

Overview

Basic Information

• Taxon OID: 3300025608
• Scaffold ID: Ga0209654_1000017
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 206416
• Total Scaffold Genes: 220
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 168 (76.36%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001588	Metagenome / Metatranscriptome	667	Y
F006020	Metagenome / Metatranscriptome	383	Y
F015039	Metagenome / Metatranscriptome	258	Y
F023291	Metagenome / Metatranscriptome	210	Y
F041087	Metagenome / Metatranscriptome	160	Y
F064106	Metagenome	129	Y
F073419	Metagenome / Metatranscriptome	120	Y
F084742	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209654_1000017178	F073419	AGG	MAFFEATTEQKQLATIGREMMNYSEEYGKIHGLGPVTEDGLRTLNNLSHVGNALTHFGATFGTTAKDFSDEDRELIVSWMQGTITIDRKDR
Ga0209654_1000017187	F041087	AGGAG	MDLWDEVIHQIENDLEDRDTTALYEMLQRVPKDVLIAYLPEEREFIVSDN
Ga0209654_1000017190	F015039	GGAGG	MAGADNTKTVYVTVALEVLRDADIQDIMSECDYSFEHSDIVDTELMGETDYA
Ga0209654_1000017197	F001588	AGGAG	MQNTNYVFLNATDAAIVVTVNNTVVGAAYTAAQLAALFTANNVNVNTDTIMCSSSVDFAQEEGFATDSCAHNIIEAALEQL
Ga0209654_1000017199	F064106	GAGG	MQITQALALQHCAQQLEYVTQTQTLCIDTAEELVAVMQQLLAANSDYAAIVAATRYSNDEVNESKYL
Ga0209654_100001720	F084742	AGAAG	VPKNKLPEEVIKHWPEIFKDVEITAIPIEYINNIYVYFHDGKVWQIDMDSQSNNDVSPLEESLEAFLEQYNDEIEHVDFRLHTSKIVKDIKNRTKSFMKKRK
Ga0209654_1000017220	F006020	AGGAG	MRATDIVRQVLDLLDQVEGQHDIQPGVIPDDTCGAEQGEPIAGRFKQIFAMLDAPSTSPLANSPNEVVAGVDAVTTLAGGGVNGPKDPADIRVKDPRGFE
Ga0209654_100001742	F023291	N/A	MNLTIDKKWKRIGISLSGGADSALLAYLVLSQTNADIYFTTQIRLWKTRPWQRYIAQEVVEWFRNRFDNRIEHIEGFIPPEMEEPHTTYITDEYEKTKPGNRIILRAHNEFIAHTHKLDAWFAGVNKNPDIDIPGALAERNEGVLPLHTTHMGVDICHPFVYTTKDWIIKQYYDNNIEDLLNLTRSCEGEFAELDYTTYTPRQFVPICNECFWCKEREWAIEQVK