NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207954_1095673

Scaffold Ga0207954_1095673


Overview

Basic Information
Taxon OID3300025606 Open in IMG/M
Scaffold IDGa0207954_1095673 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - MA0M (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)740
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010226Metagenome / Metatranscriptome306Y
F012339Metagenome / Metatranscriptome281Y

Sequences

Protein IDFamilyRBSSequence
Ga0207954_10956731F010226AGGAMAAVQVIKDTAGNVLWTTDKARINSESTNVTYQVSVQQLTYIQANGVPANAAMTTSTGNLYANAVSVPNGTIQDIYVGAGNYLILTGTNFTAVALGTASSAKYGVTGAS
Ga0207954_10956732F012339AGGMSYKPYNENLNTPTQHNPHSPASANWKPQPVEIPGVLHQSRQLYQPVVTEVPKDNK

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