Basic Information | |
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Taxon OID | 3300025606 Open in IMG/M |
Scaffold ID | Ga0207954_1000105 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA0M (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 24798 |
Total Scaffold Genes | 39 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (84.62%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Crystal Bog, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F028428 | Metagenome / Metatranscriptome | 191 | N |
F031789 | Metagenome | 181 | N |
F037549 | Metagenome / Metatranscriptome | 167 | N |
F088161 | Metagenome / Metatranscriptome | 109 | N |
Protein ID | Family | RBS | Sequence |
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Ga0207954_100010513 | F031789 | GAGG | MAINGAFYPMGRTFVLSGTTTNQSANIYADSPCGQYLFVNHEVASTGQPVYVRISATAGNNAAVANATSGNYGVPIRPAESLVLSGPQCSSGSNVFITYITAAGTANVYVTPGEGMR |
Ga0207954_100010521 | F028428 | GAGG | MSYDKKEYPVTPGKTILFSKDPSQKKNPNSPDWDGDLVLTRSYTEGQTLKLSIWKSMARNGKEYFTVKENTYFKDKELTDNAPKEVPASYKPYGGTFKKPVDDDSDVPF |
Ga0207954_100010526 | F088161 | AGG | MKLCIQCKHLMPREGDPEYALARCGAFFTIHPVSGSKIYSYAYNQRMFSEGKCGLPAAFFDLIEVHTDE |
Ga0207954_100010528 | F037549 | GAG | MNDYQLMQIWRGIKYPQKEVEQRVLEFGKQVMHESSDHYYQLGRQEAFHAMKPVLLKALSALDSAHYILMIQPVTPREEAVAVDDAIKHLSSILEVL |
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