Scaffold Ga0207954_1000105

Overview

Basic Information

• Taxon OID: 3300025606
• Scaffold ID: Ga0207954_1000105
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA0M (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24798
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028428	Metagenome / Metatranscriptome	191	N
F031789	Metagenome	181	N
F037549	Metagenome / Metatranscriptome	167	N
F088161	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207954_100010513	F031789	GAGG	MAINGAFYPMGRTFVLSGTTTNQSANIYADSPCGQYLFVNHEVASTGQPVYVRISATAGNNAAVANATSGNYGVPIRPAESLVLSGPQCSSGSNVFITYITAAGTANVYVTPGEGMR
Ga0207954_100010521	F028428	GAGG	MSYDKKEYPVTPGKTILFSKDPSQKKNPNSPDWDGDLVLTRSYTEGQTLKLSIWKSMARNGKEYFTVKENTYFKDKELTDNAPKEVPASYKPYGGTFKKPVDDDSDVPF
Ga0207954_100010526	F088161	AGG	MKLCIQCKHLMPREGDPEYALARCGAFFTIHPVSGSKIYSYAYNQRMFSEGKCGLPAAFFDLIEVHTDE
Ga0207954_100010528	F037549	GAG	MNDYQLMQIWRGIKYPQKEVEQRVLEFGKQVMHESSDHYYQLGRQEAFHAMKPVLLKALSALDSAHYILMIQPVTPREEAVAVDDAIKHLSSILEVL