NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207954_1000094

Scaffold Ga0207954_1000094


Overview

Basic Information
Taxon OID3300025606 Open in IMG/M
Scaffold IDGa0207954_1000094 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - MA0M (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25575
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F014827Metagenome / Metatranscriptome259Y
F030376Metagenome / Metatranscriptome185N

Sequences

Protein IDFamilyRBSSequence
Ga0207954_100009414F000635GAGMTLTEIAQYAGEKVGKTDSDTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTTRLITLGSNVETPLSVAYNDAEVDPIDLATIISQDPGLLSDDRTGDPDTYHFTGRNSNGVAELNLYPRLKTAGTTPLRVVEKLKCLTRTNIIVDFPPSQAALDDELRLPHVHHLVLALTHSDSLERERQYAKAQAITQTANADLALMANYELSQVGGVKQITPQSLGELTIEEMFSA
Ga0207954_100009431F014827AGTAGVIGAIFNLIASILRLIPAWREKRVSNIEGEWKHNREAIERDLRGESWWLRNNDTSNPHNGNS
Ga0207954_10000946F030376N/AMITLTAMLMASVMAEDDDADAADFVGAVLKRNGFSCGRGCVISENGGMAYSSSSGRSIISTEGFYFKSGSSIVGKDETFISKSRNFFYGTSATIKAGSAYMNGDAVWVGSQEEDND

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