NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208414_1088097

Scaffold Ga0208414_1088097


Overview

Basic Information
Taxon OID3300025603 Open in IMG/M
Scaffold IDGa0208414_1088097 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKE (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)828
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAce Lake, Antarctica
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007251Metagenome354N
F098704Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0208414_10880971F098704N/AMGKTIILTTANIEENSNNTKLVYNFPSGGYSFKNDMIALQSVYQYFSIFNITSDYGNNSFSYTWFDGIEYSITIPDGYYEISDLNSYFQSIM
Ga0208414_10880972F007251N/AVAFQVKKKGRPPVKIGKGIDVQIPQDTYKTFGKHLIHYPALRDDYKLSIKYPSRSKNVGKVKVVSPEYRELLMDMLERGVLSDRMYDKLVDEEKQHFNQAVKASGLMETIKLKPVDEDKKDLVERFKVLRGQFIAGNNAPTLIKELRSVILHFMEKGQIQKQDGYDLLKELSAVEK
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