Scaffold Ga0208768_1041874

Overview

Basic Information

• Taxon OID: 3300025601
• Scaffold ID: Ga0208768_1041874
• Source Dataset Name: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1371
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Ace Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000489	Metagenome / Metatranscriptome	1084	Y
F003376	Metagenome	490	Y
F075724	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208768_10418741	F075724	N/A	APHFVTQERIMFSNPTPSEPRLSPAATMSDATPSALTPPLHCASILQPTTPPQVVAFES
Ga0208768_10418742	F003376	GGAGG	VQGRSVRRWRGIAHRRGGREARLARGGIREHDAFLGHEMRGPAGTERGGVSMAGGREGQSARKGNGVKRLRQIGAEMV
Ga0208768_10418743	F000489	N/A	EFKQICSRESLTEKAADIEKTIVVKEHERARYDFDPTMFYENRFWNRRPDGIVINKYHRTLYILEFKRSSDRNKDFLRVKEDEANEQHRSIIEALRAAAPEWTFEQINFVAGRRGAVVEDDFYNKLEKLNVQAGKRDKILFAHVQRICEAHDTVMRSYYQQIHGSSGADATTSMENIGEQVYV