Scaffold Ga0208825_1009616

Overview

Basic Information

• Taxon OID: 3300025597
• Scaffold ID: Ga0208825_1009616
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC113_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4229
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Tissierellia → unclassified Tissierellia → Tissierellia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Hong Kong
• Coordinates
  • Lat. (^o): 22.28
  • Long. (^o): 114.17

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021262	Metagenome / Metatranscriptome	219	N
F024321	Metagenome / Metatranscriptome	206	N
F033819	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208825_10096162	F021262	AGGAG	MSKKYYIKFTTGKELTGTAKEIVTQLRNESRLLAITPRKYAKLVAKSYKMSTGLKLCTWTYNSFVKSLGKSLMVMEFKEVK
Ga0208825_10096165	F024321	GGAGG	MLEEILMIIAGMAGLGAFVSMLINLLKAIGLIKDGQGDKAFKIADLIVFVIVTIIYLTKTPVDWAQVDEWLVLLTALLGYVVSVFSGEFTHDTIKGTPLIGYSYSEKKPKG
Ga0208825_10096166	F033819	AGG	MEASESKQSRVTNTAIQSQLVELSVRLTRMEKDIQEIKKTLFESDKKIGDMEKSEAGRNPLIERRLEALEKRTDEHDIEIKELVKISQSLANSIKVLNWVTGIVGAGVVSWIVTQVLSLI