Scaffold Ga0208825

Basic Information
Taxon OID	3300025597 Open in IMG/M
Scaffold ID	Ga0208825_1000036 Open in IMG/M
Source Dataset Name	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC113_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208825_1000036 Open in IMG/M

Source Dataset Name

Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC113_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	133221
Total Scaffold Genes	169 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (15.98%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

133221

Total Scaffold Genes

169 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (15.98%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Ecosystem

Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	Hong Kong
Coordinates	Lat. (^o)	22.28	Long. (^o)	114.17	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hong Kong

Coordinates

Lat. (^o)

22.28

Long. (^o)

114.17

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014380	Metagenome / Metatranscriptome	263	Y
F015602	Metagenome / Metatranscriptome	253	Y
F017300	Metagenome / Metatranscriptome	241	Y
F030766	Metagenome / Metatranscriptome	184	Y
F041189	Metagenome / Metatranscriptome	160	Y
F059904	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208825_1000036110	F059904	N/A	MANTTTRSKQPTDGKTASTTLKLPTYDCKLIIKVVDTVSGEAVKLYKKFKIKEDFGGEAEGAMISPNLGIYYLLVGKNYLTHNTLAHEIFHAAVRVTEDRGVTDEEAQAWLAGHITATIYKFLDKKKLTIKHG
Ga0208825_1000036143	F014380	GGA	MALVNQVDKRVRMNLWDIVKYQLMTHCYLTKISVSEADLNCLTMLAISGEQELTQFCNNASKSAIFSSTQSVRNCLTKAEKKNLIKKEGKNKKKIYLNPELKIHAKGNILLDYKFLSVETNQS
Ga0208825_100003640	F017300	N/A	MYGKVKVTADENGNIIGRSQNNPEFGYIRVEQQVTQINQEGWLRRATRSALIKGRVDDLVAASFTAGQELPGKIVVRESFEPFNPQNPDRDLKMAGTTGVICRVGDQPIYRQSFYVTDDTASDELIMHDNREEIRQVQAVLRLTEKDTFKETPVATL
Ga0208825_100003651	F015602	N/A	MSQHFTGKYIKKHGLLQPFSSALSKQMELFVSHVPEGSIVECFYEVQHDDGTLPQLAKLHVMIKQLSTHVGETVENMKLLVKDRAGLCIAREVAGKEYFLAKSFGECSKEELSLAIQAAIEIGNDVNCLLY
Ga0208825_100003671	F030766	N/A	MSLTYYAQKDALGFPIPGTMMGAQEVPPSSISIPAEDVIAGGGYQVVEHPEKLRYFVRKDKNGDIIPNSLIISLDKPQGLVYEFKLLKHV
Ga0208825_100003679	F041189	N/A	MFSTKGQEVKTGGQTKSFQPGVVFAHIYGGQVRTSNKGDKKSLELTLEGPALEDFEGWAVDKNDQEGPKFKGLSARVSATIWTDQHNEPNVTKNEIMYKLAVIATELGLRDAIDSIQAVSLEDWVNQAISVLKGHDIYWFLKGTEEEYNGKTIVKLGLPKYKFVSANEAKLDKFDKNNKYHYRALENKSVTSFEPATNDFDMD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208825_1000036

Overview

Ecosystem & Geography

Associated Families

Sequences