Scaffold Ga0208825_1000009

Overview

Basic Information

• Taxon OID: 3300025597
• Scaffold ID: Ga0208825_1000009
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC113_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 211620
• Total Scaffold Genes: 389
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 282 (72.49%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Hong Kong
• Coordinates
  • Lat. (^o): 22.28
  • Long. (^o): 114.17

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055453	Metagenome	138	Y
F058120	Metagenome / Metatranscriptome	135	Y
F071209	Metagenome / Metatranscriptome	122	Y
F074429	Metagenome	119	Y
F089950	Metagenome / Metatranscriptome	108	Y
F097281	Metagenome / Metatranscriptome	104	Y
F102589	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208825_1000009100	F074429	GGAGG	MSKKSTTSFNLDKAISRIAKPSVFDRIVKEVEAKEIPAKYIEQVLVQYYDGSVVELSGNELTHPIPLNKNLSWEDMEESFKKMRDVKVFINTDRLEKDVNELVEKLLSNYC
Ga0208825_1000009146	F102589	N/A	MADVVLYRYQCRGHRKMALINNDMDALKKAIFSEVRVQHAEAGKLSDEDLNKLMFQLPDKIRLSYSGFLILKNIFTAYSFEIPETIKTRHQMGMSQMTYPYFFTKKRLILFSEMDAMMIKLHGGIEGFLETCYNIEH
Ga0208825_1000009220	F097281	N/A	MNKQTTQKEAPVNKKEQNAAHTFRVTIRDTAHFYRIVNWLNEHVGKGSDKWTMEGRVLKTLKQGKSLSPKVYIFRVDFDPQSALYLSLI
Ga0208825_1000009229	F071209	AGGA	MEKQEKDLYVPMNELIRNKETSWTFTNINLSYEEISLRGIVMWCMENLEGKWTMLGGNKFGFEDSTDALNFKIRFGL
Ga0208825_1000009234	F055453	N/A	MKIKDVLLESPTDLVARFYKEAGEHYDKFYNPEDAKYKHKNKEYYDKHFKEWFAEEVVPVFTKPVDKPQPEYTVQPKEGKLQSPGYRGLQYALARSGLPYNHHVQKYEGGLPAAMASYMNGARNNNGQ
Ga0208825_1000009321	F058120	GAGG	MTATTDIGQKLFAAIKSKDALQSLTEVQQFKENMRDTTVGTDFVLWITEPVNLTSVHKALAEDLNVPPRLLVIRRMAMSRTQRAVLLVQAIENAIRKVHKL
Ga0208825_1000009356	F089950	AGGA	MASFFKEGSNLSFQGFKGTIIKITETYRKNVIVLKVTEFPAKNPFRGRKVESIGIFEYPDGTLEFMSVID