Scaffold Ga0208248_1005582

Overview

Basic Information

• Taxon OID: 3300025595
• Scaffold ID: Ga0208248_1005582
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA5M (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3226
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012016	Metagenome	284	Y
F029418	Metagenome	188	Y
F043777	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208248_100558214	F012016	AGG	MQETLKQPYAWATEEYNINGELVWSSITQFRPKELSWIRDLPTKKHHIVITPLYKDEVNAEKITGIK
Ga0208248_10055823	F043777	AGGA	MKLINGTEIIDNSPNEKAGELAEAIYDDVIFILDIEHKCIQEDDYGNTSDTEYGQDLFNGIYEQCMAYFEREMK
Ga0208248_10055826	F029418	GGAGG	MTPEEKKRQFEEDLIEVAVAEYYQWVEVHQATRSEWNARMFYDAMRLGVIRGINYATSQYMQSLKNFEEKKNENKTDI