Scaffold Ga0208248_1000069

Overview

Basic Information

• Taxon OID: 3300025595
• Scaffold ID: Ga0208248_1000069
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA5M (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41152
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 58 (85.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F003521	Metagenome / Metatranscriptome	481	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208248_100006913	F001059	AGG	MASYDIASLKADLPTAKELTQFVYDKVGISLDLIGKPKEDQYLVAKNALEGKKVPTEFVTDENPYVDKKELVPVDDIRKLPERNKDLPPPDSQVHFFGATNMPHPLDPQSDKKVQINFRKFENGAITYQVMGPLEQVAIGTRINKYGQPTPERISWIDPRTEELMMKRPDGTFTEKGRGLYTYLIGEKGGGVWNLIDRDIVSISQKNIADPWA
Ga0208248_10000696	F000857	GGAG	MELNLNNEEARINEDYYTKGNLGAGIEGLLIKNDKMFNEVKSGTWSQTFNTRNIDYKIGAINGARYVQYDQKNVEAIKQGCKEKREFYKEHGTDNPFFAGTFHAMELPKCFAHEISSKWFSNRPWELIKQVKEDKILFYAIVNEYYSDFVCHPSGKIPLPYNPAIPTK
Ga0208248_10000699	F003521	GGA	MYSIEPKRLVSNIRAYFNKRTRATDTNKEVSASRKALIMENGECASRLLRNEDFALMFNLYRFHILERLEESKDDSERIGNAYYVAGARDFIDFIEKNEYLVKMANRKAET