NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209094_1014608

Scaffold Ga0209094_1014608


Overview

Basic Information
Taxon OID3300025594 Open in IMG/M
Scaffold IDGa0209094_1014608 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100430 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2695
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009493Metagenome317N
F094426Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0209094_10146081F094426N/AVMYLTNYTADRVKLAYTFAEHLRHNWRQLSDSKRDALLKEITELTNVQFIEQQYESRIDKIKSDGTYDKALRRAELGL
Ga0209094_10146085F009493N/AMRKNKEIVLTLGKVPSLNSFYAGSHWTKRKKAKDAALETIKEQLGYNTGAPYNSFRVTAYVRYRYDLDNSIIATKFTSDALKTLGWIKDDSPKYFRRLLMVWTEQIPKDKAQITIELSDEQPE

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