Scaffold Ga0209094_1002417

Overview

Basic Information

• Taxon OID: 3300025594
• Scaffold ID: Ga0209094_1002417
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9483
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022391	Metagenome	214	N
F027520	Metagenome	194	Y
F034138	Metagenome	175	Y
F088530	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209094_100241711	F027520	GAGG	VNSALRNQILADRRRDRRNDILASVIGWTVTIAGAFVGAALFYTVTFTFLSIGL
Ga0209094_100241712	F034138	AGG	MQAIVEFRASVYGPVLAEYNVAGRGHNHIQEKCALWGQMQEYGYWSIVYNLTSATFDKLMTVNGWPTVRGVK
Ga0209094_10024175	F088530	GAGG	MNYDKNLSKQEIQAAWDYALLSGAKHGVKMYRVFYDFMNAIGSNAADLYGLNYKKYYEPEFQDFFDGLELNRCRDRQRDGKLSCKFKMNDALSFVGARCLPLQLALLDKRVDLDEIVANVRHYKWVRKNHTGKKTKKRTHDSYRYVNLKSLTFKNQWSTVK
Ga0209094_10024176	F022391	GGAG	MTQGDYVKINSTNEMELKLKHLEARIREWDYQTALTIKLEPHRDPSSLSQDALFNIWCREIADAMKTKTPSADAEAWKLWLKQKFIGTYRVTVGRDVIGGQVYATPKGKGNMAKFMHSVLVFADTKLNVRLSVPRNSEYVRVRQNELEKESKQKAKEEGHHTAGSGEGSSATAKARSSKGEQQLGLL