Scaffold Ga0209094_1000864

Overview

Basic Information

• Taxon OID: 3300025594
• Scaffold ID: Ga0209094_1000864
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19938
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (45.83%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030099	Metagenome	186	N
F033809	Metagenome / Metatranscriptome	176	N
F077337	Metagenome / Metatranscriptome	117	N
F078401	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209094_100086412	F077337	AGAAG	MRKILTDDELTALAAKMELRRQWLMSPAGRARRDEVMRQYMKKTYSGNTQSQNKVLNFAGCYDVFEQKEMEYECKAIDGTDFVNPDYLKFKQKDFKERGLTGDWLN
Ga0209094_100086416	F078401	N/A	MLSQPSPMPQELKDLIYDENADEQEKAAAINAWKDSQYSTADAADAEAAQAIYDEKKMEGNNLISATVFLPSGNGIINCRQPETLEHCQIRF
Ga0209094_10008644	F033809	N/A	MKQRGMTTMSEELRLETKDFITKKLRDAQEATGQNKAWCLREPKKWALVAQHIIQKPNGVSEFLRNNKITRNFYYDVQTELLADPESSEIRNAWASEISSVLFQGLDTYRKSQDKYTDRVESGDIEIDGNELFKQGKSLQAFNDIHSKLTGNNIQRHVVEHKTTLDEAEEYARKMLEGIKEVEIVD
Ga0209094_10008646	F030099	N/A	MTETEHETCKSIAEQLGGTYTAMRIGKLRAAVCTEEDMDGKYILPSGVLKIMNQIKGEIDVIETASPAVVTVKVLHQQTGNPRFIFAEDLETKKKVIVSVPKRHKDIINQNGKRLKVNKGELDGQTFYRYPVR