Scaffold Ga0209094_1000313

Overview

Basic Information

• Taxon OID: 3300025594
• Scaffold ID: Ga0209094_1000313
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37054
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (89.66%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025991	Metagenome / Metatranscriptome	199	Y
F049593	Metagenome / Metatranscriptome	146	N
F088515	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209094_100031337	F025991	GGAG	MRCNCCNVILSPFESTTRKVSTNDFIDICEKCLSTIDEDVKVLTREDLRSEVGTDLANYIDCFDLTKDNDE
Ga0209094_100031342	F088515	AGG	MIDQAQHHIDEATRLIKRAIMTDTLMGNNQAEYVAFLDLWESLYDLDRLIKNWDEDEDTVKQNLLADER
Ga0209094_100031352	F049593	AGGA	MDKELQQYYETLLDLFSSQGWKQYVEDISDNMDLLQDITTIPDEKQFWFRRGQIEALQRVLSYESSIKNSYEDFEKEQYA