Scaffold Ga0208496_1013701

Overview

Basic Information

• Taxon OID: 3300025591
• Scaffold ID: Ga0208496_1013701
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA2M (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2265
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013499	Metagenome / Metatranscriptome	270	N
F021930	Metagenome / Metatranscriptome	216	N
F022867	Metagenome / Metatranscriptome	212	N
F051691	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208496_10137012	F021930	N/A	MSDQDLRKVTELLREVESEEREKVMEAAEQNLLDSLRSVENITKAIDQLVIKETKRRHDFKDLLTTIKSIVVKSKKETIDGIVEIEKSGNRPSFLAIAEKLAVQLSEIEYIISCQSLEQMGELMKIVTSEDYEEAREKIDLRFTK
Ga0208496_10137014	F022867	N/A	MELDHQIREQLTSLASNYHNRFWMKSYILSCMVMENAAQNIQLGIIGGKGVTTILEYNIEISRQIDNLSEILRHTNDITPDMVPWMTSILGHMVFLRNTIHGVDINDLVGLLRPLQLIKLGVTESRIGMEEAITNVDKKSLTEKWENELNLLH
Ga0208496_10137016	F013499	AGGA	MSEVMKDIRITISGIKGLIMLLQAHQRELASKGEPDPSEGSLETARLAIDQLKEKIEAIVGPEEPTGAEGFEVEVHESEDQSQTE
Ga0208496_10137017	F051691	N/A	MNDQGIIEEIDRLGEIAGIKKNMCKVMPPLGHRVRTLHTQFTQLTDTEKDLIRPRLENALDKILIMVRKVNHNFQEEEERNTYQDSLINE