Scaffold Ga0208496_1003982

Overview

Basic Information

• Taxon OID: 3300025591
• Scaffold ID: Ga0208496_1003982
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA2M (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4824
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045530	Metagenome / Metatranscriptome	152	Y
F061527	Metagenome / Metatranscriptome	131	N
F086589	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208496_10039821	F086589	N/A	MEATLIMLDTLLSNMEAELRTDMNINVPLNQEFEPSQQGDGDEIFLSANNDIRHSLNEIGQNSQKGDGDEIFLSANNDIR
Ga0208496_10039822	F045530	AGAAG	MNDPSTMIKSITEKLEFLNSMEELYLKVQEMLHYLGIKSPSKPDFNYYSELIKQRKQDLAFARWTIQRQYRKWFTVHMSKTGLIKIYKSKEQIKKVYNTAITEEETHRYVDEEGPPRKRFSGIYTRQKIQLN
Ga0208496_10039825	F061527	N/A	MSDYFEQAFSEILSAIKRLTIKIGTAIRIEQQKVPADPSIRTVHYYHMIIRNKIDQLSSRVAIMSFKTDQYCLLKVYGTLLIMVNRALGESNPKSKYVQLKLLHRMLGDFENNSTFSYWKDHVILGDRAVRETDG