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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025589 Open in IMG/M |
| Scaffold ID | Ga0209409_1018964 Open in IMG/M |
| Source Dataset Name | Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNMR1_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2561 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Japan | |||||||
| Coordinates | Lat. (o) | 36.29 | Long. (o) | 139.38 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014634 | Metagenome / Metatranscriptome | 261 | Y |
| F022612 | Metagenome / Metatranscriptome | 213 | Y |
| F048731 | Metagenome / Metatranscriptome | 147 | Y |
| F103107 | Metagenome / Metatranscriptome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209409_10189643 | F103107 | AGGAG | MKYQIVYWYDEKTGGYIELAGTGWDGDLSEEELLARALEEAEEVGLDLSYGKILIEEEIE |
| Ga0209409_10189644 | F022612 | AGGAGG | MRDVTIGKYKRVRKDVARRLFDQGRIIYLTPSKIVATDSSPWIKPYPINNRAGQDFDSIVNNFEFYNCCWELGYYTNFWIKEEEAW |
| Ga0209409_10189645 | F014634 | AGGAGG | MVKEKIEEIFDLKRIREYAEANINLTEWIEEEYGETRKILLIATLVEGGHGAYIPGMVLELFGEADEFDLEDPYNFEKNEAIYDALMSLETEVNKCLNELLPSKGWYYMGYHEADGSYCLFYEECEEEE |
| Ga0209409_10189646 | F048731 | AGGAGG | VIKKALRYALSISEDPKEIKKHVEEYMAAAGYDRRYKFKWHAVSGNHRFTFSGIFEYAGQRYYF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |