NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208938_1011748

Scaffold Ga0208938_1011748


Overview

Basic Information
Taxon OID3300025587 Open in IMG/M
Scaffold IDGa0208938_1011748 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC125_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3083
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)37.78Long. (o)-122.42Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013091Metagenome / Metatranscriptome274Y
F031881Metagenome / Metatranscriptome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0208938_10117482F031881N/AMNSYQFTINKKLSTVRVGENKFKFAIDKSGATTINITQDKIEDVIYSVFDNSEYLDLVRIITNIKGTQQVPKIFLQGANGVGNGLVDSQGCGFVDTTDLVLIDVPISVTKKRMGMELCLDDLVNTTLEVHISNGARNESLDIEDALLAYFTQVLRKNIQNYVFADSADGILNKILTSGTAVTPTASSDLGKLYDLFEALPADWKNSTEANPIIFISPNLMTGVRSEIITSSAPITSSIEVVNNRFNLPLTNAVVVATPYLTGTSAVAGIQNYLFLGTDLESDFEDTRIWYSNDNETIRFSSQLYLGTAVADITDFATYVKTVTP
Ga0208938_10117483F013091N/AMICKLTNGISLKDCDTPGGVFESYFINVEDVDTLTVTDFQVSDLTLKTDAKAYKIAFEPETSNFSSNAVGSQENSSAAFEQACEIKINKVDNNVLKQIDALTKGRHLVIIKKADGTYEMYFHEGGAKFFANYTTGTALEDASGVTLTATHRQPSNMLIVSATVIATLAIAEETEPVTP
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Biomedical Sciences Research Center "Alexander Fleming"
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