Scaffold Ga0208938

Basic Information
Taxon OID	3300025587 Open in IMG/M
Scaffold ID	Ga0208938_1007222 Open in IMG/M
Source Dataset Name	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC125_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208938_1007222 Open in IMG/M

Source Dataset Name

Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC125_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4454
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

4454

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (37.50%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Ecosystem

Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	USA
Coordinates	Lat. (^o)	37.78	Long. (^o)	-122.42	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA

Coordinates

Lat. (^o)

37.78

Long. (^o)

-122.42

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022893	Metagenome / Metatranscriptome	212	N
F023320	Metagenome / Metatranscriptome	210	N
F087074	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208938_10072224	F022893	GAGG	MKLKKAKKLTISYKVKVKHFEDFLLLCSYDKTDVDGFINLLSKCTEVDKEIFYNLRFADLIRFVDELVDSVDKEMYKAPKKAIKINDRYYKLIDLLNLQVAFYVDFDLVEKTPSYLLALCYTETGSYTDDRNSSVDEREKIMQNADIIDYMRLANFFLTWRDFLKRLKEIAKK
Ga0208938_10072226	F023320	GAG	MKQYKALTFEVDLSGLGKEQWIQAELDYDEIAQKLIDTLIDVMREKDVEASSNLIQSLEPESKQGEIVIYADYYWKFIDKGVNGLRQSRDSEFSFKFVPASKKHALSIAKWLEFRGLATEFTTLADAYRVATATKIKGIRGRKFVEEFEKELDKIEIL
Ga0208938_10072227	F087074	GAG	MIQGVYVYRKGGEVIGTPLPAFDDLFLQIESDNTAAGLYFIVDFLNEDSSKKVTIKLYPKIGYNEVETYISQILRNLFDKNFYFFNLNIKVKEYDENGYVSDFFMQFVVIPSIYNSFLPPLKNYYFYYYNGADYDILTKTGLKLYNYYTQDELDDSVTIDTNLKKIEKYNGEVITLTHKQVCEPLLKLKYLNLHTGYYDTFGGWYIKQDTVNIEKQIYNRQKLGDMGTRQALPELTDEFTLISYDLPVDQANYIAKNIIMSPKTYLIDTNENEVECVVMNKTHTDALSVVNVFANINLNIKL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208938_1007222

Overview

Ecosystem & Geography

Associated Families

Sequences