Scaffold Ga0208546_1004403

Overview

Basic Information

• Taxon OID: 3300025585
• Scaffold ID: Ga0208546_1004403
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3996
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005320	Metagenome / Metatranscriptome	405	Y
F074881	Metagenome / Metatranscriptome	119	Y
F088893	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208546_10044034	F088893	GGAG	VQTGVKHIDKNQIIFDVEGNTFKVRIGQDLDLEEVYTVLVSAVVHLEELALGMVAHPESQELH
Ga0208546_10044035	F074881	AGGA	MVFNIEPNEAAFIVRVIGQLPTESGAFPLHQKLVAQFQEQEKQTETVDAE
Ga0208546_10044036	F005320	AGGA	MSIDSMKPVKVAGELYWSNWMKEYNKKFNEANDKYECTLGQLSDAACAKLEELGIKLKDKDTMGKYIVGKSKFLFEPVDEEGNPVDISKIGNGTKCYALVSSYRHKMSAKFGAAPSIKKIVITELKVYSPEGAEEEETADDIL