Scaffold Ga0208546_1000610

Overview

Basic Information

• Taxon OID: 3300025585
• Scaffold ID: Ga0208546_1000610
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12456
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (21.74%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F002985	Metagenome / Metatranscriptome	515	Y
F043890	Metagenome / Metatranscriptome	155	Y
F056552	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208546_100061011	F002333	N/A	MSIQTQAKLNSAQALIYSRSNIRRAYQDFDDTTIAGIYLRSDHCVVVRHDGTEQIYDRSLIKTAFQQYTNRLKDFFSYLGPNYRGPSVWHNNAYILFKGWNYSHALGHLTSNAKLQAHWADKFIHVSDPAKIKVLLQSDQTDLGHLVAPDGLRLPNRPLDMDSELDDVQEQQSSFGEPSCSCGSFQRQLSNLSAFQEEIQGFKPWCIHLTWFNKYRELLCKRTDTRNASPSGTPEKCVAWWYAPPSDHTSNGRFVLLHTKSGAQAPLGHWRTYKPQEVFTQHDAWDLFFNMMEAGYTPFPGTSLPQLKAVIKKQ
Ga0208546_100061012	F043890	N/A	MLKPNSIDKLQVECIDEEDGSMTICIGWDETDPDLQWWTDLGPEGQECFMIDALYEACACYVD
Ga0208546_100061013	F002738	N/A	MSIDTYGLSSEQYEEFFEDNIRFSSQLYVKTCNIMSAEGAKNVDFKTILDLYQEAVYAANDDCRRYQKTNNPEVLKDTDLLGIYPSREEMLEEIKSVSAKVEALADYVTELIKVTTKGLEGVAESLVD
Ga0208546_100061016	F001018	N/A	MAHITQAKLESLSVIKLYEHYGALERSLPLLTPESQELAKAELECCANLRSEKIDRIYYAIAAHEDALERIKKEGDLITQAKRHHESQLNQLKNLLGWLRRSLPLDSNRIQGKNYEFVLSKKKELTVEITSDPEFWHTDERSKFCIQQEVTTTKQIVVRSMSGEVLSNRTEPKTKTETLPNLDAIRNAYQNGEHLPSGVKVEQQYSIRKNRLFSAKRMEPQTSEYFGEFLPELDSAE
Ga0208546_10006104	F002985	N/A	MSYVIACWRWGTPHAITANKETNKFELIPLDSDVALNKIFSHPYRAGAQQILTWINKNDSSLASEELEVRDEAQFRK
Ga0208546_10006108	F056552	GAGG	MSTPTHDQFILLYEDEHTKVLHEFKGVVADDVMQHIVDFLKGCGYMESNVFEAMKELSDMYFDSLKTQEYLMTWDKPAAE