Scaffold Ga0208546_1000524

Overview

Basic Information

• Taxon OID: 3300025585
• Scaffold ID: Ga0208546_1000524
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13930
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (52.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012760	Metagenome / Metatranscriptome	277	Y
F021985	Metagenome / Metatranscriptome	216	Y
F040538	Metagenome	161	Y
F057305	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208546_100052410	F021985	N/A	MAQEQQDPIQHLYAVLFRESKIILSNYEKYLQDKITSKELAQKMLNLRDAIQRIESHKK
Ga0208546_100052418	F057305	AGGA	MAKRIKKRIINKKHKGNEDHSYYFVAHVDSSGEVTPLLLTDMEFIEAKKRAQKNQEDVPIDFIVFSQAKKL
Ga0208546_10005243	F040538	AGGA	MEITTVDRPTKIQRVFDYMRGGAPLTAGQARQRFKIQNMRATMHDMREAFDRMDLNYTVRRENRNGRSVYRVSRNRSR
Ga0208546_10005245	F012760	AGGAG	MKIPELVYEIRNLARKEEDPVKKDLFFQCAKSMEILGNLAKIADLGVAEYKNSKDLNTIELDGNIKHYIDEITLEMLDEHIDALVHYKFISKDDRWPYGNEEIIKFTPKYLKSQIVKDSNME