Scaffold Ga0208546_1000499

Overview

Basic Information

• Taxon OID: 3300025585
• Scaffold ID: Ga0208546_1000499
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14392
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (82.61%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000645	Metagenome / Metatranscriptome	962	Y
F001322	Metagenome	722	Y
F004115	Metagenome / Metatranscriptome	452	Y
F005878	Metagenome / Metatranscriptome	387	Y
F009683	Metagenome / Metatranscriptome	314	Y
F099166	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208546_100049910	F001322	AGGA	MTQWSPEYRVKINNAVSTSATLSGLTITSGRSSIYSQPIAGYCNLTLIETNLAEVDFDVNDSVTIEVKNTSGTYVYLFGGFITDVSITVQNSGAAAITQKINIIAVGALARLSRTIYTGNLPHEFDGDRISYLLGLVLFDAWNEVPASTTWATYDATTIWANAENSGYGEIDIPGDYELHSLTGLNDTIYNLASSAATSGLGYLYEDAQGRIGYADSTHRNEYLAANGYVDLDANQSIGPNLQITKKAGDVRNSVTISYGATGSASVTDSDPTSISLYGELAATIATNLRNQVDAENQAAYYLDIRSYPQFELKQITFPLSSPEVDDSDRNALLNVFMGLPINLSNLPANMVDGSFQGFVEGWTWIANLNSLTLTLNVSPVAYSLQAMRWNSVPVTETWQTISTTLDWLNATIIA
Ga0208546_100049918	F009683	GGAG	MSERSLSDWLSDAGNTLEDRGLEYGDPRHNLLRIYKIARQFGVQLRDPADVALVFIATKLSRMVESPEREDSYLDLIGYAAILGFCRFSTPEDWDDIESDSQL
Ga0208546_100049919	F004115	GGA	MTLSLTRNSNQHQWCDYCKMRWGQLKDGSWHLKAQVPAVWKVQSETPNRRAQVRFYCQPCANEAQNWPDGTFWSLKEQLQMAIDEFAGRERLNVELP
Ga0208546_100049920	F000645	GGAG	MSNYLDDYVSVQDRLKEFINEYPDYRIKTHVLEESLTSNCDVYIVKTELYRTEADSVAWTTGLSSEAKSKQYALELAETGSLGRALNLAGYFAKPAGGPKKPIQTVNPKLAEFVKEQRPNDPEPIVWDVTAIAEELGAEVIDEIPLCSQGCGPMVLKQGNKEGKEYRGWVCPRPKSGHPAKWMRIGSDGKWVFQK
Ga0208546_100049921	F005878	GGAG	MTGNAHPFKCGPCKKVTVHSFVTKYDSEITEGDEVWLMECQNCFEQRLFDPVDRVINREDEIGRCDQCGNYKLKAAKCRICRIASGQERIKERYWNGNATLERFIDADI
Ga0208546_100049923	F099166	GAGG	MTIKDLSLKLAAISLLADQAKRLKDELRAELKTEMDNLGADRVKAELGDDVVAYITTTKPKFKWVIKSDRKFIEWVKANVPSEIVETVRDSSIDAILDKFNYVDEMVIDPNGEPVDWLEGSLSEPYLTTKFHGEGREKLRNAIIGWDAANEIDLHKVLELEG