Scaffold Ga0208546_1000450

Overview

Basic Information

• Taxon OID: 3300025585
• Scaffold ID: Ga0208546_1000450
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15176
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (86.36%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Associated Families: 15

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F000868	Metagenome / Metatranscriptome	853	Y
F001019	Metagenome / Metatranscriptome	804	Y
F002071	Metagenome / Metatranscriptome	596	Y
F004666	Metagenome / Metatranscriptome	428	Y
F005177	Metagenome / Metatranscriptome	409	Y
F005745	Metagenome / Metatranscriptome	391	Y
F007363	Metagenome / Metatranscriptome	352	Y
F007470	Metagenome / Metatranscriptome	350	Y
F017484	Metagenome / Metatranscriptome	240	Y
F024549	Metagenome / Metatranscriptome	205	Y
F026195	Metagenome / Metatranscriptome	198	Y
F078406	Metagenome / Metatranscriptome	116	N
F095357	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208546_100045011	F000868	GGAG	MAESFLENENQMVIDAIYHEIGEQLVEDWVQSNLDEGQMYADYRFAEMSNDNYIKGRFNLFYDLNPEDQYYLEWDENV
Ga0208546_100045013	F000450	AGGA	MGDRANFGFVQPNGNTIVLYGHWAGHQMLGRLADAVIAARPRWNDTAYATRIAISQLIKDDWNSETGWGLHVNEIADNEHKIAIVDFNQQTFSLHEEDSFSNTSNKVRGMKNEALFTMDLSTFCEKYALEGILVN
Ga0208546_100045015	F007470	AGGAG	MDYQDGFEDGVKFAREVIINNIRLWAETSEDGQAYDDIADRLEFGTVDYDL
Ga0208546_100045016	F000311	GAG	MYFELTAPDRLSLEMAYWEAQISGLDPEFMPPLTFNVGTGSIEKVSRIRDKFNLVESYTADAQPTGYIRR
Ga0208546_10004502	F026195	N/A	MGFLDNLEAWLDFEEDIDKDPEMGHSNPEIGYSTGKWSDEDDRHPVITPVFGPNR
Ga0208546_100045020	F005177	AGGA	MKNRYRVEIFDEIKDNDLTLYSDEGVNKEYLTELVFSNLRRFSGNVRAYVFDNLKKKKTTALYLPMEVIPKKTELTKLLG
Ga0208546_100045021	F024549	N/A	MLKYLSLLTERKQMYKLTVLYDGDVFATYQYSDALQAFEAFARCIDVGFAENEATYNLSMPTGKMYTKNFNRAGLVSAK
Ga0208546_100045023	F002071	AGGA	MATTLEIGQTFTTEKSGVIGVIKAVDNHPSGVARVLLDVNGSERWTSVSI
Ga0208546_100045025	F078406	AGGA	MLSTATALIEATEQSIFDEEVMGFAQAFCHNAKDLDTEQFAKSIYVYSCMLASLAVDKAMKVLLSEDEIIDLMNAIDELETMRDEVMNNGE
Ga0208546_10004503	F095357	AGGTGG	MAQSKEIKVGELLANSVEDYWFNPATLGHYLSQQPNWTIDRVMEVVCWIIEKNAGVYKDKAGKQEISEGLALAYTLDNLINRIKEANNFNHIKLP
Ga0208546_100045036	F007363	GGAG	MKGKLTMKSYSIVDLLVDTYYAPTSLRRRFNGGIINHAEKREDIYLPEGYEAFAIRYRPTGRFNDEWATVAVRVADY
Ga0208546_100045037	F017484	AGGA	MGYLEIFEMNENGAGWVSLENASTSTKLDLELAMLTKAEVKMLCFVCHKEIAKGNVCVNHKNVRGAVYFE
Ga0208546_10004504	F004666	AGGA	MTTKREYLASKGITVGRRGRFSSAAKQALQEAESQGIKFVAESKTPKK
Ga0208546_10004506	F001019	AGGAGG	MSNYAPSLEILEVNYSVSPGGVDTFEVYDKSEIEPVQLPIYETESLTEAVQFCYNLGRDFIVRTYAEWEMRELLADI
Ga0208546_10004509	F005745	AGGA	MNITATELDPRLHKLVNLGVSGIDIMHGELKIKMLEAEAELQMAQEIEEENDYSDAMESMERKYWEGYTDALAALYSLTYDLSFAIADKEAKNGN