Scaffold Ga0208546_1000394

Overview

Basic Information

• Taxon OID: 3300025585
• Scaffold ID: Ga0208546_1000394
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16467
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (53.85%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014726	Metagenome / Metatranscriptome	260	Y
F014837	Metagenome / Metatranscriptome	259	Y
F016141	Metagenome / Metatranscriptome	249	Y
F023295	Metagenome / Metatranscriptome	210	Y
F024095	Metagenome / Metatranscriptome	207	Y
F063343	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208546_100039413	F063343	N/A	MNYLILLGILGLFAIGSKSSVGWVQSIKETLLKIMVPGADRRLFSGFTQATFSWIRNPASWVRVFNWTGYAAGINGLGGVGGGTLITRRHVLFANHVPYPARPFDIFFVNADSRTFTYKVVNVQQVGDTDIAIGTLDRDADATLTVYKVLPDNWTQYAKAKTESFSAMGVTGTATSVSLPVLYSNQDRKVSTADLINVRAGVADLGIPAFEVARSFGDPIRGGDSGNPIFVPVGNELVLLGGFKQLGTGGVIASFPWLIDYRGAIENIIGQKLQVVDLGRYA
Ga0208546_100039414	F023295	AGGAG	MLLSMLQGLGCQTRVILVPDGQPVMLAEPVKARIYAFDSTGKLVPSSNKVVLPAGWYALPRK
Ga0208546_100039419	F014837	N/A	MIQRNINPKPRFVTLTSGPSTGALVGVPLATLYRAAFFRFPQDSIVHYVMVNSTLTANGALSQGIGSIAYGQGDQAIGDSLNPGADNFTDNVIWRDELLNPIAGVISEGKSTQIIMNEFFVHTGTGFGIYVNGTNASVNINATIAFNPIAEWVNFREPTVGVRI
Ga0208546_100039420	F024095	GGCGG	MDNTNSLPFVYVVTASLGAAVGATVSTTLIMQADSRFELMGIMGTGGTAATTEDSLQYPNSFTVSIRDQTTGRDLMSAPVPQRVLCGNAFKQFLEKRGIIFEPQSNLLFTFTNLTAATNSITLALHGYKIII
Ga0208546_100039421	F016141	AGGA	MTPEIIDSLQKRFGSSDFSRYQVVRGQKYDFVRLQAAGTSSVSFFSNPIGAVDPGSGAAGIFKTLEQTNLVKNASFGQEYFALTQIRCYANFVPQARQGFTPGSNFAFRGYTALADSAMENLQSVLNTGVLEIKFAQKLYYQIARPFVQCPPGFGIDVQSLGSSRTGNAAETQVSDTNWLVRPDYRGSSVYNIDPIQIIEPEIQIQAAINFPTGNTPSFTGVTLTTANDAAGLSTGVELGLIFDGYVIRPSQ
Ga0208546_100039422	F014726	N/A	MGFQSESIISAASQKFGVIDYSRWQAIRWQWYSYVTYPTAGASELNFFGQVAGQAGVTLQDTNLPKAGSFGQTHFQLKSISTDIQLANNNLDGFTLANGVANTIDTFALASDFLNGFVQAGVLEFSVGARPFATIPKPFMYAPPPGNPVDYDNSYANQIGAVPTAGNPQVVGLPWVTQTKRRDNVYFVDPNILIEAEQQFAVKLSFPSGAVPVIANALVNNTTNPLKVGVVFDGLLLRPV