Scaffold Ga0208546

Basic Information
Taxon OID	3300025585 Open in IMG/M
Scaffold ID	Ga0208546_1000326 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208546_1000326 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18553
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (85.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

18553

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (85.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002997	Metagenome / Metatranscriptome	514	Y
F006660	Metagenome	367	Y
F014737	Metagenome / Metatranscriptome	260	Y
F024113	Metagenome / Metatranscriptome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208546_100032615	F006660	GGAG	MSFQTIVDIQQSMTVNNRRTIGQQVTRGGQIRTAQYLTSVPWVFTITPHNFLYYPQVRDVIQTIDNLDRELPANITFSSATLSWFTEYKGGLNAVQAAALTLASVPPANSQTITVGNLPAVGSSTVVFAAGDFLQLGSYVYKVTQQVLRGSASTVSVSLHRPVIGTPATGTLTAVGSAVYFPVYAEVCPTYTLTPMTAGAFVNWDQPFVFRENVAP
Ga0208546_100032616	F014737	GGAG	MTTTMTALNSANIRHAEFVKLSVGNPASPTIYTFCNAAAPITVGGNTFSALGALLSVGEVQRDVKATSFDMSIALTGIDPNYVALILSSDIKGSTVEVWRGFLDSNNQIITTPTTQFFKRWQGIINNVSITEDFNEQMRQRVATCNITCSSMRRVLENRIAGIKTNKTIWQSIYSGDTSMSRVDAISNTYFDFGGKPNTGSISEPGGSQDIPDVQQN
Ga0208546_100032620	F024113	GGA	MAIFNKNTLAQVSGFDNPILAGELVWNQKTYWNLSFTNCATGLPIPLTGATLDAQIVRRQVSNIVDTRNGLTFDIADYTPTPTPVNLTISNRNDAAGTFTLVIDDSTWSLINSDPQLEINAQDCVGFSGRIKVSFPASGSTPQDDAIIFLLFLVR
Ga0208546_10003267	F002997	GAG	MAIARFENIAVNNLTFGKSDFGEQSTTQTKWFDTRARVSDVANSLRISERYRLYQDLVQLTLNYTPNTKAIVDRQDLYSFTWRGHDWRITDCREANDRMSITFMCYRNDPVTAV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208546_1000326

Overview

Ecosystem & Geography

Associated Families

Sequences