Scaffold Ga0208546

Basic Information
Taxon OID	3300025585 Open in IMG/M
Scaffold ID	Ga0208546_1000266 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	21281
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (53.12%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F014606	Metagenome	261	Y
F028146	Metagenome	192	N
F036674	Metagenome	169	Y
F081255	Metagenome	114	N

Family

Category

Number of Sequences

3D Structure?

Metagenome

261

Metagenome

192

Metagenome

169

Metagenome

114

Protein ID	Family	RBS	Sequence
Ga0208546_100026618	F081255	N/A	MTTEQFNELLLEVRAIRSALTQNKPAAPAVASKPAPTGPKDIPLPSEVIENAGDIAVHFGKNKGTPLGSLSAKSVEWYAQEPEPRLRNDGTPFPPRLEDVLLRNAARTIVHRNRGTLPSPPVKLESAAPISEDVPF
Ga0208546_100026620	F028146	N/A	MSTNEIKTAVLNSAAEQLRGLLESNYDAIRKAASDSFVDDESQAEPVAKVSASIEWDALAQAPTVIVKLGWSARFKDESEATVDPLQSKLAIEEEP
Ga0208546_10002665	F036674	N/A	MATVRDFDPAQLAYDYAGILEQAGITFSYLGATVTGVWAASRNMFADFEDQRRDDVRFTVFFTTSQVTGTPAQTQTCVRAGMTYFVEQVRFDAEGTGCEMDVTKVI
Ga0208546_10002667	F014606	AGGAG	MSTRTDIRNAIATALTTQGVVVTANILKGRNNTLASVSFPSCAVYAVHEDIEVRTLAPANRDQYRVLQVVVEYFTAQTSTTLIDDLFDTGSAAVEAAVLSDVTLGGVCRDTHLTSVDYVIEPDENLRWGVARHNFNCIYLTTD

Protein ID

Family

RBS

Sequence

Ga0208546_100026618

N/A

MTTEQFNELLLEVRAIRSALTQNKPAAPAVASKPAPTGPKDIPLPSEVIENAGDIAVHFGKNKGTPLGSLSAKSVEWYAQEPEPRLRNDGTPFPPRLEDVLLRNAARTIVHRNRGTLPSPPVKLESAAPISEDVPF

Ga0208546_100026620

N/A

MSTNEIKTAVLNSAAEQLRGLLESNYDAIRKAASDSFVDDESQAEPVAKVSASIEWDALAQAPTVIVKLGWSARFKDESEATVDPLQSKLAIEEEP

Ga0208546_10002665

N/A

MATVRDFDPAQLAYDYAGILEQAGITFSYLGATVTGVWAASRNMFADFEDQRRDDVRFTVFFTTSQVTGTPAQTQTCVRAGMTYFVEQVRFDAEGTGCEMDVTKVI

Ga0208546_10002667

AGGAG

MSTRTDIRNAIATALTTQGVVVTANILKGRNNTLASVSFPSCAVYAVHEDIEVRTLAPANRDQYRVLQVVVEYFTAQTSTTLIDDLFDTGSAAVEAAVLSDVTLGGVCRDTHLTSVDYVIEPDENLRWGVARHNFNCIYLTTD

NMPFamsDB