Scaffold Ga0208546

Basic Information
Taxon OID	3300025585 Open in IMG/M
Scaffold ID	Ga0208546_1000257 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208546_1000257 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21746
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (81.82%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

21746

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (81.82%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002540	Metagenome / Metatranscriptome	550	Y
F003377	Metagenome / Metatranscriptome	490	Y
F012767	Metagenome	277	Y
F021516	Metagenome	218	Y
F039989	Metagenome	162	Y
F066715	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208546_100025712	F021516	GGAG	MPKIKFTRAWRGYRKGQTAELPGGITTQLLAQRVAVEDNQPSLIETAAIEHDVETADATPKRSRRRAVSKPDTPDRASR
Ga0208546_100025720	F066715	AGGAG	MADNILSRKNRDIDITLATATASATTLDMRDVAGAVVSFGTMSTNASALQMWVGTSTAGTFRRLYKSDGSVADLTLSASSTDGRAYALPDEVFGTEFLKIVSATTNSTGTVGVVMLKS
Ga0208546_100025723	F003377	GAGG	MTDAAKETMYGIIERWGFPTLVAIACGWVLRQDVLLPLVEEHRTFVKSLSETQREISKAVSEQTRLLYALQPRAGESQEN
Ga0208546_100025725	F039989	GAGG	VRYLLCLLIAVIGCVATLPDDHGVSADMACETARMVTQLRQEIAPTPASDKCDNCDGTGKIGDGRIVLECPACKGTGKK
Ga0208546_100025728	F002540	AGGAGG	VPNYEATPAELEKYGGNLSIWDQIRLLQTWAPLVGFAQRFAQTADPYAKAVIVSEAAEWVASKTDAKVDDQLVRLLGDLLKTKEGEALVRWCLLQVEAAR
Ga0208546_100025730	F012767	AGGAGG	VRGNTATISLTAFRADWATHMPMRALCERWTISRDQVIRLAVVWELPRRHDRKLRAKPVRQRDPTTTEIQQACIQIQATWSDDVREDRRVTKTQLVSLKRIPLDSETREHTAYDGDADLWEANR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208546_1000257

Overview

Ecosystem & Geography

Associated Families

Sequences