Scaffold Ga0208546_1000215

Overview

Basic Information

• Taxon OID: 3300025585
• Scaffold ID: Ga0208546_1000215
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25062
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (54.35%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005633	Metagenome / Metatranscriptome	394	Y
F007260	Metagenome / Metatranscriptome	354	N
F010835	Metagenome / Metatranscriptome	298	N
F013412	Metagenome / Metatranscriptome	271	N
F013879	Metagenome / Metatranscriptome	267	N
F023575	Metagenome / Metatranscriptome	209	Y
F031459	Metagenome / Metatranscriptome	182	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208546_100021513	F007260	AGG	MGNPSFIWQGSLVRCIPAAITDANNVINGGFQDNVQVRLLVKLADWRLADSTLVTVDATVWSADVGSTADRLLQESGSLILQENTDALQLTFGKMIPVVGRTLTYDGRTLRIISAKRDGTGAYYVLELGAKTK
Ga0208546_100021514	F013879	GGGGG	MRPTVTVDTSRFDAAWKEYLPKTKRSLADAVNARTFFLMLRLYCLLPPKSPQAARNKILDYYNRPIGAARFDKKTGKKVGRSRQLRLVHLIAQAKNAKAGNEGLYGQKMKDAAAKLRRRAAGSVGYLKSCVTKGIKKLSPSFQQFGGTRRAKKGSTQVRSVAANQALVNLANQYGLPYENVSMHRGSSAYAYNAKAGFNPHSHVRMNIGLADDQIGKVESIYSKAMQQAYDDEARELEIHIAAKLAEAFDGSESKGIVVQ
Ga0208546_100021515	F010835	AGGA	MNGVAMRTERALADWLAAQDWSASPLGTPACLTSYGHGAFNDPDLEDRMPDFPRIVIRSSTAVPVHPIDRTCELDVTATLQLSADDTSESDALLTVAAFENILQPLFVDDNISDLNTGDDDPSGGFTAFFATPTDFGVNDTSERARTFSRSMTIFAAANSI
Ga0208546_100021516	F023575	N/A	MATSKGLALVYGSGGTITLYNQTGAGPGTALSGAISTIESYDVTHEADVEQIKNGSGEVVAQVSANERISLNITFIPSSATDAAAALTGASLPGVNSYVKITDAKATTYGGVSINGDYVYSGGGSVKFTNSGKAMVTMTVTKFPSLTGSATVYTL
Ga0208546_100021527	F013412	GGAGG	MRHLWARGFGKLYRDAELITTDDGKTFLLAVIEFEQRTLGNGKPYSQRVQFRSFDRDDMEIVDQLVAGTYVMFDGDCDATADKSQTGWWYANPRVTGRIHEISHAS
Ga0208546_10002153	F005633	N/A	MRIATTIAVDKTGKSKLVSGPDVSADLQRTNFNTASVPEGGKLILWIQGALAPKVRKG
Ga0208546_10002159	F031459	N/A	MQHDSTNSGSGVGISLATAAAAGAVSFLPQLTQWFQLGAAVLAFIAAAIGLYKAIKK