NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208546_1000207

Scaffold Ga0208546_1000207


Overview

Basic Information
Taxon OID3300025585 Open in IMG/M
Scaffold IDGa0208546_1000207 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25445
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (53.12%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001272Metagenome / Metatranscriptome733Y
F005206Metagenome / Metatranscriptome408Y
F007856Metagenome / Metatranscriptome343Y
F058105Metagenome135N
F061810Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0208546_100020711F061810AGGALASAGGGNVIPVDPPILRRDLLQEDDFFVLLEDASKIVLSLGTYDRIATEQGTDLLLTEDSSKFILTVY
Ga0208546_100020714F001272N/AMIHIELTQEQANQLLQLIEIAIKAGGYANAKVGVPLADIIIAAAQPKPE
Ga0208546_100020721F058105N/AVNAHPTIISAAKLLKEKWPTCSTWNNDELLNWIGIFNAKRQIGIVMDGDECVGVGAVRFINSIEESKDIYNDDPNGHIAWIEVVVTSKPMAVQTLWLAMKARCSASVTKMGGTNVHTGVSRLYDFERYFKLLMNDRICYGRNIQGT
Ga0208546_100020729F005206N/AMKFTVDRSQAEVKSFAKPGEYTVVVNSAKDEGLDKYGNPVVTIRYKAATGETASDRFTLKETLMWRVQSLISATDANIDDGKEFDFSVPGAFLAFLQGFVGLALNIVLEEEKYTDKNGAEQNVLRVKRLKKTPADEAF
Ga0208546_100020732F007856N/AMNRTIVACDPGVNGGFAVKTQDRILLFPMPESVPDIHELLMDIKLSDSHIWIEKVPKFVSKLTPAAAVATLHENYGIVQGLA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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